Here is a list of recommended hotels:

Holiday Inn San Diego-Bayside
4875 N Harbor Dr, San Diego, CA 92106-2304
877-859-5095
1.0 miles from Rock Church

Courtyard San Diego Airport/Liberty Station
2592 Laning Rd, San Diego, CA 92106-6418
844-631-0595
0.5 miles from Rock Church

Homewood Suites by Hilton San Diego Airport – Liberty Station
2576 Laning Road, San Diego, CA 92106-6418
855-605-0320
0.6 miles